PROJECT INFORMATION
GOLD Project ID
Gp0003531  
Project Name
Bacteroides dorei DSM 17855  
Other Names
  
Legacy ER Project ID
13150  
Legacy GOLD ID
Gi02571  
NCBI BioProject Name Bacteroides dorei DSM 17855
NCBI BioProject ID 27831
NCBI BioProject Accession PRJNA27831
NCBI Locus Tag
BACDOR  
NCBI BioSample Accession SAMN00000029
PI Human Gut Community Users
Added By Heather Creasy on 2007-12-08
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Gut Microbiome Initiative (HGMI)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX001871  (Link to NCBI )
Experiment Title 454 Sequencing of Bacteroides dorei DSM17855 Whole Genome Shotgun Library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2342176217
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX000035  (Link to NCBI )
Experiment Title 454 sequencing of Bacteroides dorei DSM 17855 genomic fragment library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2235463026
Library Layout SINGLE
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Bacteroides dorei DSM 17855
Analysis Projects Bacteroides dorei DSM 17855
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
924337  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003531
Organism Name
Bacteroides dorei DSM 17855  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides dorei  
Subspecies
  
Species Synonyms
  
Strain
DSM 17855  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17855  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10176  
Exemplar Name
Phocaeicola dorei  
Taxon DOI
10.1601/tx.36463  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 483217
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
  
NCBI Genus
Phocaeicola  
NCBI Species
Phocaeicola dorei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB242142
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Human fecal
Feces
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  
HMP METADATA
HMP ID
115  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2007-11-02  
Date Sequencing Begins
2008-01-04  
Date Draft Sequencing Completed
2008-06-18  
Cross Reference ID
  

 

 

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