PROJECT NAME
GOLD Project ID
Gp0003483  
Project Name
Saccharomonospora viridis P101, DSM 43017  
Other Names
  
Legacy ER Project ID
19  
Legacy GOLD ID
Gi02228, Gc01088  
NCBI BioProject Name Saccharomonospora viridis DSM 43017
NCBI BioProject ID 20835
NCBI BioProject Accession
PRJNA20835  
NCBI Locus Tag
Svir  
NCBI BioSample Accession
SAMN02598440  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Human Pathogen
Medical
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Causes hypersensitivity pneumonitis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database DOE Joint Genome Institute
Genome Publications Standards in genomic sciences 1(2):141-9 Complete genome sequence of Saccharomonospora viridis type strain (P101).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Saccharomonospora viridis P101, DSM 43017
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
8Kb, Fosmid  
Number Of Reads
  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
67  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003483
Organism Name
Saccharomonospora viridis P101, DSM 43017  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Saccharomonospora  
Genus Synonyms
  
Species
Saccharomonospora viridis  
Subspecies
  
Species Synonyms
  
Strain
P101, DSM 43017  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 43017  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6747  
Exemplar Name
Saccharomonospora viridis  
Taxon DOI
10.1601/tx.6747  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 471857
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Saccharomonospora  
NCBI Species
Saccharomonospora viridis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Bog  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 98375
Genbank 16S ID Z38007
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spore-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Thermophile  
Temperature Optimum
55  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Farmer's lung
Hypersensitivity pneumonitis
Known Habitats Bog
Wetland
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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