Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0003454
|
|
Project Name
|
Endomicrobium trichonymphae Rs-D17
|
|
Other Names
|
|
|
Legacy ER Project ID
|
94
|
|
Legacy GOLD ID
|
Gc00763
|
| NCBI BioProject Name | uncultured Termite group 1 bacterium phylotype Rs-D17 |
|
NCBI BioProject Accession
|
PRJDA20871 |
|
NCBI Locus Tag
|
TGRD
|
|
NCBI BioSample Accession
|
SAMD00060933 |
|
Source Sample ID
|
|
| PI | Hongoh Y |
| Added By | Daniel P. Herlemann on 2008-03-25 |
| Last Modified By | Supratim Mukherjee on 2022-06-02 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
RIKEN
(Japan)
|
|
Collaborating Institute
|
University of Tokyo
(Japan)
|
|
Funding Agency
|
|
|
Project Description
|
Uncultured termite group 1 bacterium phylotype Rs-D17
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Proceedings of the National Academy of Sciences of the United States of America: 105(14):5555-60 Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell. PubMed: 18391199 DOI: 10.1073/pnas.0801389105 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Candidatus Endomicrobium sp. Rs-D17 |
| Organism |
Endomicrobium trichonymphae Rs-D17 |
| Analysis Projects |
Endomicrobium trichonymphae Rs-D17 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sorting Technology
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger 454 GS20 |
|
Library Method
(MIGS-28)
|
2-4 kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
35
|
| Chromosome Count |
1
|
| Plasmid Count |
3
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003454 |
| Organism Name |
Endomicrobium trichonymphae Rs-D17
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ELUSIMICROBIOTA
|
| Genus |
Endomicrobium
|
| Genus Synonyms |
|
| Species |
Endomicrobium trichonymphae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Rs-D17
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
No
|
| Culture Type |
|
| Organism Type |
Natural
|
| Uncultured Type |
Single Cell
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1408204 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Elusimicrobiota
|
| NCBI Class |
Endomicrobiia
|
| NCBI Order |
Endomicrobiales
|
| NCBI Family |
Endomicrobiaceae
|
| NCBI Genus |
Endomicrobium
|
| NCBI Species |
Candidatus Endomicrobium trichonymphae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Arthropoda: Insects
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Reticulitermes speratus
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Host Gut |
| Metabolisms |
Cellulose degrader |
| Phenotypes |
Symbiotic |
| Energy Sources |
|
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