PROJECT NAME
GOLD Project ID
Gp0003444  
Project Name
Aminobacterium colombiense ALA-1, DSM 12261  
Other Names
  
Legacy ER Project ID
13488  
Legacy GOLD ID
Gi02908, Gc01257  
NCBI BioProject Name Aminobacterium colombiense DSM 12261
NCBI BioProject ID 32587
NCBI BioProject Accession
PRJNA32587  
NCBI Locus Tag
Amico  
NCBI BioSample Accession
SAMN02598488  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-15
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
GEBA
Tree of Life
Wastewater treatment
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Amino acid degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
GEBA
Database
  
Genome Publications Standards in genomic sciences 2(3):280-9 Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Aminobacterium colombiense ALA-1, DSM 12261
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
250bps Illumina, 12Kb pyrosequence  
Number Of Reads
85.5x pyrosequence, 909Mb Illumina  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003444
Organism Name
Aminobacterium colombiense ALA-1, DSM 12261  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SYNERGISTETES  
Genus
Aminobacterium  
Genus Synonyms
  
Species
Aminobacterium colombiense  
Subspecies
  
Species Synonyms
  
Strain
ALA-1, DSM 12261  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 12261  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4470  
Exemplar Name
Aminobacterium colombiense  
Taxon DOI
10.1601/tx.4470  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 572547
NCBI Kingdom
  
NCBI Phylum
Synergistetes  
NCBI Class
Synergistia  
NCBI Order
Synergistales  
NCBI Family
Synergistaceae  
NCBI Genus
Aminobacterium  
NCBI Species
Aminobacterium colombiense  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 163095
Genbank 16S ID AF069287
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Curved-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
7.3  
Cell Diameter
0.2 - 03 um  
Cell Length
3 - 4 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Aquatic
Wastewater treatment plant
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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