PROJECT NAME
GOLD Project ID
Gp0003386  
Project Name
Treponema amylovorum ATCC 700288  
Other Names
  
Legacy ER Project ID
13462  
Legacy GOLD ID
Gi02905  
NCBI BioProject Name Treponema amylovorum
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI
Added By Heather Creasy on 2008-01-12
Last Modified By Tatiparthi B. Reddy on 2013-01-29
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Targeted
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003386
Organism Name
Treponema amylovorum ATCC 700288  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Treponema  
Genus Synonyms
  
Species
Treponema amylovorum  
Subspecies
  
Species Synonyms
  
Strain
ATCC 700288  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700288  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7859  
Exemplar Name
Treponema amylovorum  
Taxon DOI
10.1601/tx.7859  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553169
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Y09959
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
859  
Show in DACC?
Yes  
HMP Project Status
Targeted  
BEI Status
  
NCBI Submission Status
0. project has not been submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Originally committed to JCVI. Project discontinued  
Project Comments
  
DNA Received
  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_541  

 

 

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