PROJECT NAME
GOLD Project ID
Gp0003359  
Project Name
Chryseobacterium gleum F93, ATCC 35910  
Other Names
  
Legacy ER Project ID
13253  
Legacy GOLD ID
Gi02674  
NCBI BioProject Name Chryseobacterium gleum ATCC 35910
NCBI BioProject ID 30953
NCBI BioProject Accession
PRJNA30953  
NCBI Locus Tag
HMPREF0204  
NCBI BioSample Accession
SAMN00000627  
PI BCM-HGSC
Added By Heather Creasy on 2007-12-23
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Chryseobacterium gleum F93, ATCC 35910
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina
Library Method (MIGS-28)
  
Number Of Reads
954137  
Read Size
  
Vector
  
GC Percent
37  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003359
Organism Name
Chryseobacterium gleum F93, ATCC 35910  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Chryseobacterium  
Genus Synonyms
  
Species
Chryseobacterium gleum  
Subspecies
  
Species Synonyms
  
Strain
F93, ATCC 35910  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 35910  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8089  
Exemplar Name
Chryseobacterium gleum  
Taxon DOI
10.1601/tx.8148  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525257
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Chryseobacterium  
NCBI Species
Chryseobacterium gleum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Vagina  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M58772
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
204  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2007-08-29  
Date Draft Sequencing Completed
2007-08-29  
Cross Reference ID
  

 

 

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