PROJECT NAME
GOLD Project ID
Gp0003358  
Project Name
Cetobacterium somerae ATCC BAA-474  
Other Names
  
Legacy ER Project ID
13251  
Legacy GOLD ID
Gi02672  
NCBI BioProject Name Cetobacterium somerae ATCC BAA-474
NCBI BioProject ID 210739
NCBI BioProject Accession
PRJNA210739  
NCBI Locus Tag
HMPREF0202  
NCBI BioSample Accession
SAMN02436737  
PI Human Gut Community Users
Added By Heather Creasy on 2007-12-23
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Isolation
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Cetobacterium somerae ATCC BAA-474
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003358
Organism Name
Cetobacterium somerae ATCC BAA-474  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Cetobacterium  
Genus Synonyms
  
Species
Cetobacterium somerae  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-474  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-474  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8396  
Exemplar Name
Cetobacterium somerae  
Taxon DOI
10.1601/tx.8396  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1319815
NCBI Kingdom
  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Fusobacteriaceae  
NCBI Genus
Cetobacterium  
NCBI Species
Cetobacterium somerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ438155
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Feces
Gastrointestinal tract
Host
Human fecal
Human intestinal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
202  
Show in DACC?
Yes  
HMP Project Status
In Progress  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Intestinal tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2013-03-20  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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