PROJECT INFORMATION
GOLD Project ID
Gp0003356  
Project Name
Yersinia pseudotuberculosis sv. IB PB1/+  
Other Names
  
Legacy ER Project ID
60  
Legacy GOLD ID
Gi03038, Gc00776  
NCBI BioProject Name Yersinia pseudotuberculosis PB1/+
NCBI BioProject ID 28745
NCBI BioProject Accession PRJNA28745
NCBI Locus Tag
YPTS  
NCBI BioSample Accession SAMN02598458
PI Nikolich, Mikeljon
Added By Nikos Kyrpides on 2008-02-23
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Pathogen
Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Serotype IB strain  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Placeholder for Acetobacter aceti
Analysis Projects Yersinia pseudotuberculosis sv. IB PB1/+
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0003356
Organism Name
Yersinia pseudotuberculosis sv. IB PB1/+  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Yersinia  
Genus Synonyms
  
Species
Yersinia pseudotuberculosis  
Subspecies
  
Species Synonyms
  
Strain
PB1/+  
Strain Synonyms
  
Serovar-Biovar
IB  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 502801
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Yersiniaceae  
NCBI Genus
Yersinia  
NCBI Species
Yersinia pseudotuberculosis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Gastroenteritis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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