PROJECT NAME
GOLD Project ID
Gp0003350  
Project Name
Finegoldia magna ATCC 29328  
Other Names
  
Legacy ER Project ID
55  
Legacy GOLD ID
Gc00725  
NCBI BioProject Name Finegoldia magna ATCC 29328
NCBI BioProject ID 18981
NCBI BioProject Accession
PRJDA18981  
NCBI Locus Tag
FMG  
NCBI BioSample Accession
  
PI Goto T
Added By Nikos Kyrpides on 2008-02-20
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center Wakayama Medical University (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
A causal agent of valve endocarditis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes 15(1):39-47 Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Finegoldia magna ATCC 29328
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
38776  
Read Size
  
Vector
  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0003350
Organism Name
Finegoldia magna ATCC 29328  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Finegoldia  
Genus Synonyms
  
Species
Finegoldia magna  
Subspecies
  
Species Synonyms
  
Strain
ATCC 29328  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 29328  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 334413
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
Tissierellales  
NCBI Family
Peptoniphilaceae  
NCBI Genus
Finegoldia  
NCBI Species
Finegoldia magna  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 106725
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Endocarditis
Opportunistic infection
Known Habitats Host
Human skin
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
9361  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_662  

 

 

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