PROJECT NAME
GOLD Project ID
Gp0003323  
Project Name
Cellvibrio japonicus Ueda107  
Other Names
  
Legacy ER Project ID
13570  
Legacy GOLD ID
Gi02988, Gc00821  
NCBI BioProject Name Cellvibrio japonicus Ueda107
NCBI BioProject ID 28329
NCBI BioProject Accession
PRJNA28329  
NCBI Locus Tag
CJA  
NCBI BioSample Accession
SAMN02603448  
PI Robert T. DeBoy
Added By Nikos Kyrpides on 2008-01-25
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioenergy
Biofuels
Biotechnological
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cellulolytic bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 190(15):5455-63 Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Cellvibrio japonicus Ueda107
Analysis Projects Cellvibrio japonicus Ueda107
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3 kb, 8-10 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003323
Organism Name
Cellvibrio japonicus Ueda107  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Cellvibrio  
Genus Synonyms
  
Species
Cellvibrio japonicus  
Subspecies
  
Species Synonyms
  
Strain
Ueda107  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCIMB 10462  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2729  
Exemplar Name
Cellvibrio japonicus  
Taxon DOI
10.1601/tx.2729  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 498211
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Cellvibrionaceae  
NCBI Genus
Cellvibrio  
NCBI Species
Cellvibrio japonicus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural land  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 344762
Genbank 16S ID AF452103
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Terrestrial
Metabolisms Biomass degrader
Cellulose degrader
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?