PROJECT NAME
GOLD Project ID
Gp0003295  
Project Name
Bifidobacterium bifidum ATCC 29521  
Other Names
  
Legacy ER Project ID
13232  
Legacy GOLD ID
Gi02653  
NCBI BioProject Name Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456
NCBI BioProject ID 28655
NCBI BioProject Accession
PRJNA28655  
NCBI Locus Tag
BIFBIF  
NCBI BioSample Accession
SAMN02436821  
PI Human Gut Community Users
Added By Heather Creasy on 2007-12-22 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Bifidobacterium bifidum ATCC 29521
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003295
Organism Name
Bifidobacterium bifidum ATCC 29521  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Bifidobacterium  
Genus Synonyms
  
Species
Bifidobacterium bifidum  
Subspecies
  
Species Synonyms
  
Strain
ATCC 29521  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 29521  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7678  
Exemplar Name
Bifidobacterium bifidum  
Taxon DOI
10.1601/tx.7678  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 500634
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Bifidobacterium  
NCBI Species
Bifidobacterium bifidum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID S83624
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Feces
Gastrointestinal tract
Host
Human fecal
Human intestinal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
161  
Show in DACC?
Yes  
HMP Project Status
In Progress  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2012-09-25  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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