JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0003293
Project Name	Bdellovibrio sp. AF148938
Other Names
Legacy ER Project ID	13230
Legacy GOLD ID	Gi02651
NCBI BioProject Name
NCBI BioProject Accession
NCBI Locus Tag
NCBI BioSample Accession
Source Sample ID
PI	Unknown
Added By	Heather Creasy on 2007-12-22
Last Modified By	Nikos Kyrpides on 2009-08-31
Project Comments
Project Status	targeted
Project Relevance	Human Microbiome Project (HMP) Medical
Sequencing Center
Collaborating Institute
Funding Agency	NIH (USA)
Project Description
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
JGI Award DOI
Genome Publications
Other Publications
Ignored Publications
Unassigned Publications
SRA Experiment
PROJECT COMPOSITION
Study	Human Microbiome Project (HMP) Reference Genomes
Organism	Bdellovibrio sp. AF148938
Analysis Projects
Number of Analysis Projects (AP)	0
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	Targeted
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
DNA Amplification Method
Single Cell Lysis Protocol
Single Cell Lysis Approach
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)
Library Method (MIGS-28)
Library Layout
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0003293
Organism Name	Bdellovibrio sp. AF148938
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	BDELLOVIBRIONOTA
Genus	Bdellovibrio
Genus Synonyms
Species	Bdellovibrio sp.
Subspecies
Species Synonyms
Strain	AF148938
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain	Unknown
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	Yes
Culture Type	Isolate
Organism Type	Natural
Uncultured Type
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	28201
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Bdellovibrionota
NCBI Class	Bdellovibrionia
NCBI Order	Bdellovibrionales
NCBI Family	Pseudobdellovibrionaceae
NCBI Genus	Bdellovibrio
NCBI Species	Bdellovibrio sp.
ISOLATION CLASSIFICATION
Ecosystem	Host-associated
Ecosystem Category	Mammals: Human
Ecosystem Type	Integumentary system
Ecosystem Subtype	Skin
Specific Ecosystem	Unclassified
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID	AF148938

GENERAL PROPERTIES
Oxygen Requirement	Anaerobe
Cell Shape	Curved-shaped
Motility	Motile
Sporulation	Nonsporulating
Temperature Range	Mesophile
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining	Gram-
Biotic Relationships	Free living
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats	Host Human skin
Metabolisms
Phenotypes
Energy Sources

HMP METADATA
HMP ID	158
Show in DACC?	Yes
HMP Project Status	Targeted
BEI Status
NCBI Submission Status	0. project has not been submitted to NCBI
Isolate Suggestion Source
HMP Isolation Body Sample Site	Skin
HMP Isolation Body Sample Subsite
HMP Finishing Goal
Source, Sample & Medical Relevance Comments
Isolate Availability Comments
Project Comments
DNA Received
Date DNA Received
Date Sequencing Begins
Date Draft Sequencing Completed
Cross Reference ID

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