PROJECT NAME
GOLD Project ID
Gp0003221  
Project Name
Hydrogenobacter thermophilus TK-6, DSM 6534  
Other Names
  
Legacy ER Project ID
38  
Legacy GOLD ID
Gi03025, Gc01411  
NCBI BioProject Name Hydrogenobacter thermophilus TK-6
NCBI BioProject ID 41547
NCBI BioProject Accession
PRJNA41547  
NCBI Locus Tag
Hydth  
NCBI BioSample Accession
SAMN00191234  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-02-06
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Hydrogenobacter thermophilus TK-6 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 4(2):131-43 Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).
Other Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Hydrogenobacter thermophilus TK-6, DSM 6534
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
454097 pyroseuqence,12484847 Illumina.  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0003221
Organism Name
Hydrogenobacter thermophilus TK-6, DSM 6534  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Hydrogenobacter  
Genus Synonyms
  
Species
Hydrogenobacter thermophilus  
Subspecies
  
Species Synonyms
  
Strain
TK-6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 6534  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.431  
Exemplar Name
Hydrogenobacter thermophilus  
Taxon DOI
10.1601/tx.431  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 608538
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Aquificaceae  
NCBI Genus
Hydrogenobacter  
NCBI Species
Hydrogenobacter thermophilus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Z30214
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
  
Cell Diameter
0.3 - 0.5 um  
Cell Length
2 - 3 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Hot spring
Soil
Metabolisms Hydrogen oxidizer
Phenotypes
  
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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