PROJECT INFORMATION
GOLD Project ID
Gp0002938  
Project Name
Strongylocentrotus purpuratus A3  
Other Names
  
Legacy ER Project ID
12857  
Legacy GOLD ID
Gi00632  
NCBI BioProject Name Strongylocentrotus purpuratus
NCBI BioProject Accession PRJNA10736
NCBI Locus Tag
SPU  
NCBI BioSample Accession
PI Highlander, SK
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Hema Katta on 2019-03-06
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Model Organism
Sequencing Center Baylor College of Medicine
Collaborating Institute Association Nationale Recherche Technologie (France)
Funding Agency Stowers Institute for Medical Research (USA)
Project Description
Genome sequencing for Strongylocentrotus purpuratus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 97(17):9514-8 A sea urchin genome project: sequence scan, virtual map, and additional resources.

Other Publications
  
Ignored Publications
  
Unassigned Publications Proceedings of the National Academy of Sciences of the United States of America 91(12):5368-71 A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria.

"Science (New York, N.Y.)" 314(5801):941-52 The genome of the sea urchin Strongylocentrotus purpuratus.

Show more publications...

SRA Experiment
  
PROJECT COMPOSITION
Study Strongylocentrotus purpuratus A3
Organism Strongylocentrotus purpuratus A3
Analysis Projects Strongylocentrotus purpuratus A3
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
20  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002938
Organism Name
Strongylocentrotus purpuratus A3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
ECHINODERMATA  
Genus
Strongylocentrotus  
Genus Synonyms
  
Species
Strongylocentrotus purpuratus  
Subspecies
  
Species Synonyms
  
Strain
A3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 7668
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Echinodermata  
NCBI Class
Echinoidea  
NCBI Order
Camarodonta  
NCBI Family
Strongylocentrotidae  
NCBI Genus
Strongylocentrotus  
NCBI Species
Strongylocentrotus purpuratus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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