PROJECT INFORMATION
GOLD Project ID
Gp0002267  
Project Name
Methanofollis liminatans GKZPZ, DSM 4140  
Other Names
  
Legacy ER Project ID
12167  
Legacy GOLD ID
Gi02537, Gc02391  
NCBI BioProject Name Methanofollis liminatans DSM 4140
NCBI BioProject ID 52839
NCBI BioProject Accession PRJNA52839
NCBI Locus Tag
Metli  
NCBI BioSample Accession SAMN02256542
PI Jonathan Eisen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Methanofollis liminatans DSM 4140 genome sequencing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Methanofollis liminatans GKZPZ, DSM 4140
Analysis Projects Methanofollis liminatans GKZPZ, DSM 4140
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002267
Organism Name
Methanofollis liminatans GKZPZ, DSM 4140  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanofollis  
Genus Synonyms
  
Species
Methanofollis liminatans  
Subspecies
  
Species Synonyms
  
Strain
GKZPZ, DSM 4140  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 4140  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.197  
Exemplar Name
Methanofollis liminatans  
Taxon DOI
10.1601/tx.190  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 28892
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanomicrobiaceae  
NCBI Genus
Methanofollis  
NCBI Species
Methanofollis liminatans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Y16428
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Wastewater treatment plant
Metabolisms Methanogen
Phenotypes
  
Energy Sources
  

 

 

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