PROJECT NAME
GOLD Project ID
Gp0002264  
Project Name
Methylocapsa acidiphila B2  
Other Names
  
Legacy ER Project ID
12163  
Legacy GOLD ID
Gi01550  
NCBI BioProject Name Methylocapsa acidiphila B2
NCBI BioProject ID 72841
NCBI BioProject Accession
PRJNA72841  
NCBI Locus Tag
Metac  
NCBI BioSample Accession
SAMN02441570  
PI Peter Dunfield
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylocapsa acidiphila B2 Genome Sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Taxonomy
Information
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Obligate methanotrophy CSP_777358
Analysis Projects Methylocapsa acidiphila B2
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Unknown
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002264
Organism Name
Methylocapsa acidiphila B2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylocapsa  
Genus Synonyms
  
Species
Methylocapsa acidiphila  
Subspecies
  
Species Synonyms
  
Strain
B2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 13967  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1453  
Exemplar Name
Methylocapsa acidiphila  
Taxon DOI
10.1601/tx.1453  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 395964
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Beijerinckiaceae  
NCBI Genus
Methylocapsa  
NCBI Species
Methylocapsa acidiphila  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Bog  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ278726
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
11 - 32  
Salinity
  
pH
4.2 - 7.2  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms Methane oxidation
Phenotypes Acidophile
Energy Sources Methylotroph

 

 

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