PROJECT INFORMATION
GOLD Project ID
Gp0002259  
Project Name
Methylobacterium extorquens PA1  
Other Names
  
Legacy ER Project ID
12158  
Legacy GOLD ID
Gi01342, Gc00701  
NCBI BioProject Name Methylobacterium extorquens PA1
NCBI BioProject ID 18637
NCBI BioProject Accession PRJNA18637
NCBI Locus Tag
Mext  
NCBI BioSample Accession SAMN00000030
PI not listed
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Biotechnological
Methanol production
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Capable of epiphytic colonization of Arabidopsis at efficiencies 1000 endash fold higher than the common, sequenced laboratory strain, M. extorquens AM1  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology 194(17):4746-8 Complete genome sequences of six strains of the genus Methylobacterium.
Other Publications
  
PROJECT COMPOSITION
Study LGT in Methylobacteria Proposal # 0165-051130
Analysis Projects Methylobacterium extorquens PA1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002259
Organism Name
Methylobacterium extorquens PA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylobacterium  
Genus Synonyms
  
Species
Methylobacterium extorquens  
Subspecies
  
Species Synonyms
  
Strain
PA1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 419610
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Methylobacteriaceae  
NCBI Genus
Methylorubrum  
NCBI Species
Methylorubrum extorquens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Methylotroph

 

 

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