Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0002226
|
|
Project Name
|
Yersinia pestis Madagascar
|
|
Other Names
|
|
|
Legacy ER Project ID
|
12125
|
|
Legacy GOLD ID
|
Gi01282
|
| NCBI BioProject Name |
|
|
NCBI BioProject Accession
|
|
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
|
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | Nikos Kyrpides on 2008-11-03 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
Human Pathogen Medical |
|
Sequencing Center
|
J. Craig Venter Institute
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
National Institute of Allergy and Infectious Diseases
(USA)
|
|
Project Description
|
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Yersinia pestis Madagascar |
| Organism |
Yersinia pestis Madagascar |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
In progress |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
47
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0002226 |
| Organism Name |
Yersinia pestis Madagascar
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Yersinia
|
| Genus Synonyms |
|
| Species |
Yersinia pestis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Madagascar
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
632 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Yersiniaceae
|
| NCBI Genus |
Yersinia
|
| NCBI Species |
Yersinia pestis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles |
| Diseases |
Bubonic and Pneumonic plague |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Heterotroph |
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