PROJECT NAME
GOLD Project ID
Gp0002192  
Project Name
Aliivibrio salmonicida LFI1238  
Other Names
  
Legacy ER Project ID
12091  
Legacy GOLD ID
Gi00679, Gc00865  
NCBI BioProject Name Aliivibrio salmonicida LFI1238
NCBI BioProject ID 30703
NCBI BioProject Accession
PRJEA30703  
NCBI Locus Tag
VSAL  
NCBI BioSample Accession
SAMEA1705917  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Fish Pathogen
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute ANRT (France)
ANRT (France)
Funding Agency
  
Project Description
Causes Hitra disease in Atlantic salmon and rainbow trout  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Psychrophiles
Database
  
Genome Publications BMC genomics 9(616):616 The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Aliivibrio salmonicida LFI1238
Analysis Projects Aliivibrio salmonicida LFI1238
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2.2 -4.0 kb , 4.0 -12.0 kb and 50¿70 kb inserts  
Number Of Reads
  
Read Size
  
Vector
pUC19, pMAQ1Sa, pBeloBACII  
GC Percent
39  
Chromosome Count
2  
Plasmid Count
4  
ORGANISM NAME
GOLD Organism ID Go0002192
Organism Name
Aliivibrio salmonicida LFI1238  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aliivibrio  
Genus Synonyms
Vibrio  
Species
Aliivibrio salmonicida  
Subspecies
  
Species Synonyms
  
Strain
LFI1238  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 316275
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Aliivibrio  
NCBI Species
Aliivibrio salmonicida  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 379913
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Hitra disease
Known Habitats Fresh water
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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