PROJECT NAME
GOLD Project ID
Gp0002138  
Project Name
Victivallis vadensis ATCC BAA-548  
Other Names
  
Legacy ER Project ID
12040  
Legacy GOLD ID
Gi01047  
NCBI BioProject Name Victivallis vadensis ATCC BAA-548
NCBI BioProject ID 15583
NCBI BioProject Accession
PRJNA15583  
NCBI Locus Tag
VvadDRAFT  
NCBI BioSample Accession
SAMN00000035  
PI Thomas Schmidt
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Nikos Kyrpides on 2011-09-17 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Evolution
Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Member of human intestinal microflora  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Information
Isolation
Database
  
Genome Publications Journal of bacteriology 193(9):2373-4 Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Verrucomicrobia, 5 species Proposal # 0087-060710
Analysis Projects Victivallis vadensis ATCC BAA-548
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002138
Organism Name
Victivallis vadensis ATCC BAA-548  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
LENTISPHAERAE  
Genus
Victivallis  
Genus Synonyms
  
Species
Victivallis vadensis  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-548  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-548  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8413  
Exemplar Name
Victivallis vadensis  
Taxon DOI
10.1601/tx.8413  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 340101
NCBI Kingdom
  
NCBI Phylum
Lentisphaerae  
NCBI Class
Lentisphaeria  
NCBI Order
Victivallales  
NCBI Family
Victivallaceae  
NCBI Genus
Victivallis  
NCBI Species
Victivallis vadensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY049713
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Feces
Gastrointestinal tract
Host
Intestinal tract
Metabolisms Cellobiose-degrading
Phenotypes
  
Energy Sources
  

 

 

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