PROJECT INFORMATION
GOLD Project ID
Gp0002119  
Project Name
Thermosipho africanus TCF52B  
Other Names
  
Legacy ER Project ID
12019  
Legacy GOLD ID
Gi01046, Gc00896  
NCBI BioProject Name Thermosipho africanus TCF52B
NCBI BioProject ID 27767
NCBI BioProject Accession PRJNA27767
NCBI Locus Tag
THA  
NCBI BioSample Accession SAMN02603170
PI Camilla Nesbo
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2018-02-06
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Biotechnological
Sequencing Center Genome Canada (Canada)
Collaborating Institute Dalhousie University (Canada)
Funding Agency
  
Project Description
Oil-field bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 191(6):1974-8 The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.
Other Publications
  
PROJECT COMPOSITION
Study Thermosipho africanus TCF52B
Analysis Projects Thermosipho africanus TCF52B
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
Clone-based sequencing  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1- to 4-kb and 40-kb inserts  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002119
Organism Name
Thermosipho africanus TCF52B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
THERMOTOGAE  
Genus
Thermosipho  
Genus Synonyms
  
Species
Thermosipho africanus  
Subspecies
  
Species Synonyms
  
Strain
TCF52B  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 484019
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermotogae  
NCBI Class
Thermotogae  
NCBI Order
Thermotogales  
NCBI Family
Fervidobacteriaceae  
NCBI Genus
Thermosipho  
NCBI Species
Thermosipho africanus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Petrochemical  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
75  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats Marine
Aquatic
Host
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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