| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0002100
|
|
Project Name
|
Teredinibacter turnerae T7901
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11998
|
|
Legacy GOLD ID
|
Gi01476, Gc01045
|
| NCBI BioProject Name | Teredinibacter turnerae T7901 |
|
NCBI BioProject ID
|
30839 |
|
NCBI BioProject Accession
|
PRJNA30839 |
|
NCBI Locus Tag
|
TERTU
|
|
NCBI BioSample Accession
|
SAMN02603454 |
| PI | Dan Distel |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biofuels Biotechnological |
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
|
Collaborating Institute
|
University of Maine
|
|
Funding Agency
|
National Science Foundation (NSF)
(USA)
|
|
Project Description
|
A dinitrogen-fixing, cellulolytic, endosymbiotic gamma-proteobacterium
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Isolation |
|
Database
|
|
|
Genome Publications
|
PloS one
4(7):e6085
The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Teredinibacter turnerae T7901 |
| Organism |
Teredinibacter turnerae T7901 |
| Analysis Projects |
Teredinibacter turnerae T7901 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger 454 GS20 |
|
Library Method
(MIGS-28)
|
3-4Kb, 8-10Kb, 33-39Kb
|
|
Number Of Reads
|
6144 Sanger reads, 158697 454-GS20 reads
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
51
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0002100 |
| Organism Name |
Teredinibacter turnerae T7901
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Teredinibacter
|
| Genus Synonyms |
|
| Species |
Teredinibacter turnerae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
T7901
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
No
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
377629 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Cellvibrionales
|
| NCBI Family |
Cellvibrionaceae
|
| NCBI Genus |
Teredinibacter
|
| NCBI Species |
Teredinibacter turnerae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Animal
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AY028398 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Lyrodus pedicellatus
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Host Endosymbiont |
| Metabolisms |
Cellulose degrader Dinitrogen-fixing |
| Phenotypes |
|
| Energy Sources |
Chemoheterotroph |
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