PROJECT INFORMATION
GOLD Project ID
Gp0002081  
Project Name
Streptomyces scabiei 87.22  
Other Names
  
Legacy ER Project ID
11977  
Legacy GOLD ID
Gi00630, Gc01270  
NCBI BioProject Name Streptomyces scabiei 87.22
NCBI BioProject ID 40749
NCBI BioProject Accession PRJEA40749
NCBI Locus Tag
SCAB  
NCBI BioSample Accession SAMEA2272773
PI Bignell DR
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance Antibiotic production
Plant Pathogen
Agricultural
Biotechnological
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute Cornell University (USA)
Funding Agency National Science Foundation (NSF) (USA)
U.S. Department of Agriculture (France)
Project Description
soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Publication
Database
  
Genome Publications Molecular plant-microbe interactions : MPMI 23(2):161-75 Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions.
Other Publications
  
PROJECT COMPOSITION
Study Streptomyces scabiei 87.22
Analysis Projects Streptomyces scabiei 87.22
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0002081
Organism Name
Streptomyces scabiei 87.22  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Streptomyces  
Genus Synonyms
  
Species
Streptomyces scabiei  
Subspecies
  
Species Synonyms
  
Strain
87.22  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 680198
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptomycetales  
NCBI Family
Streptomycetaceae  
NCBI Genus
Streptomyces  
NCBI Species
Streptomyces scabiei  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Scab disease
Known Habitats Soil
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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