PROJECT NAME
GOLD Project ID
Gp0002077  
Project Name
Streptococcus uberis 0140J  
Other Names
  
Legacy ER Project ID
11973  
Legacy GOLD ID
Gi00625, Gc00948  
NCBI BioProject Name Streptococcus uberis 0140J
NCBI BioProject ID 353
NCBI BioProject Accession
PRJNA353  
NCBI Locus Tag
SUB  
NCBI BioSample Accession
SAMEA3138207  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-04-02
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Cattle Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute University of Warwick
University of Cambridge (United Kingdom)
University of Newcastle
Funding Agency Beowulf Genomics (United Kingdom)
Project Description
Clinical isolate that causes bovine mastitis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications BMC genomics 10(54):54 Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis.
Other Publications
  
PROJECT COMPOSITION
Studies Streptococcus uberis 0140J
Analysis Projects Streptococcus uberis 0140J
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1.4 - 2 kb, 2.8 - 3.3 kb, 12 - 48 kb, 20-40kb  
Number Of Reads
  
Read Size
  
Vector
M13, pUC18, pBACe3.6, pEpiFos  
GC Percent
37  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002077
Organism Name
Streptococcus uberis 0140J  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
Streptococcus uberis  
Subspecies
  
Species Synonyms
  
Strain
0140J  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-854  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 218495
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus uberis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 493299
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases Mastitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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