PROJECT INFORMATION
GOLD Project ID
Gp0002016  
Project Name
Simkania negevensis Z, ATCC VR-1471  
Other Names
  
Legacy ER Project ID
11913  
Legacy GOLD ID
Gi00771, Gc01893  
NCBI BioProject Name Simkania negevensis Z
NCBI BioProject ID 49035
NCBI BioProject Accession PRJEA49035
NCBI Locus Tag
SNE  
NCBI BioSample Accession
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center University of Vienna (Austria)
Collaborating Institute
  
Funding Agency
  
Project Description
Simkania negevensis Z genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Molecular biology and evolution 28(12):3253-70 Unity in variety--the pan-genome of the Chlamydiae.
Other Publications
  
PROJECT COMPOSITION
Study Simkania negevensis Z
Analysis Projects Simkania negevensis Z, ATCC VR-1471
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0008371
Organism Name
Simkania negevensis Z  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLAMYDIAE  
Genus
Simkania  
Genus Synonyms
  
Species
Simkania negevensis  
Subspecies
  
Species Synonyms
  
Strain
Z  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC VR-1471  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7787  
Exemplar Name
Simkania negevensis  
Taxon DOI
10.1601/tx.7787  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 331113
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlamydiae  
NCBI Class
Chlamydiia  
NCBI Order
Parachlamydiales  
NCBI Family
Simkaniaceae  
NCBI Genus
Simkania  
NCBI Species
Simkania negevensis  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID U68460:{1-1545}
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Pneumonia
Bronchiolitis
Respiratory infection
Known Habitats Host
Wastewater
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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