PROJECT NAME
GOLD Project ID
Gp0002011  
Project Name
Shewanella violacea DSS12  
Other Names
  
Legacy ER Project ID
11908  
Legacy GOLD ID
Gi00557, Gc01272  
NCBI BioProject Name Shewanella violacea DSS12
NCBI BioProject ID 34739
NCBI BioProject Accession
PRJDA34739  
NCBI Locus Tag
SVI  
NCBI BioSample Accession
  
PI Kaoru Nakasone
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center
  
Collaborating Institute Keio University (Japan)
Japan Agency for Marine-Earth Science and Technology (Japan)
Kindai University
Funding Agency
  
Project Description
study the adaptations necessary for growth at high pressures and low temperatures  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Piezophiles
Psychrophiles
Database
  
Genome Publications Molecular bioSystems 6(7):1216-26 Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Shewanella violacea DSS12
Analysis Projects Shewanella violacea DSS12
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1.4 kb inserts  
Number Of Reads
100000  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002011
Organism Name
Shewanella violacea DSS12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella violacea  
Subspecies
  
Species Synonyms
  
Strain
DSS12  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 10179  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2935  
Exemplar Name
Shewanella violacea  
Taxon DOI
10.1601/tx.2935  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 637905
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella violacea  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Aquatic
Marine
Mud
Sediment
Metabolisms
  
Phenotypes Piezophile
Energy Sources Heterotroph

 

 

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