PROJECT NAME
GOLD Project ID
Gp0001927  
Project Name
Xylanimonas cellulosilytica XIL07, DSM 15894  
Other Names
  
Legacy ER Project ID
11826  
Legacy GOLD ID
Gi02069, Gc01153  
NCBI BioProject Name Xylanimonas cellulosilytica DSM 15894
NCBI BioProject ID 19715
NCBI BioProject Accession
PRJNA19715  
NCBI Locus Tag
Xcel  
NCBI BioSample Accession
SAMN00002456  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Produces abundant cellulases and xylanases  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications Standards in genomic sciences 2(1):8-Jan Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Xylanimonas cellulosilytica XIL07, DSM 15894
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
8Kb, 454  
Number Of Reads
52128 Sanger, 514866 pyrosequence  
Read Size
  
Vector
pMCL200  
GC Percent
72  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001927
Organism Name
Xylanimonas cellulosilytica XIL07, DSM 15894  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Xylanimonas  
Genus Synonyms
  
Species
Xylanimonas cellulosilytica  
Subspecies
  
Species Synonyms
  
Strain
XIL07, DSM 15894  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15894  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6185  
Exemplar Name
Xylanimonas cellulosilytica  
Taxon DOI
10.1601/tx.6185  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 446471
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Promicromonosporaceae  
NCBI Genus
Xylanimonas  
NCBI Species
Xylanimonas cellulosilytica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 304309
Genbank 16S ID AF403541
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
  
Cell Diameter
0.8 um  
Cell Length
1.1 um  
Color
White  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Plants
Wood
Metabolisms Cellulose degrader
Xylan degrader
Phenotypes Lacks Mycolic acids
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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