PROJECT NAME
GOLD Project ID
Gp0001922  
Project Name
Actinosynnema mirum 101, DSM 43827  
Other Names
  
Legacy ER Project ID
11821  
Legacy GOLD ID
Gi02064, Gc01024  
NCBI BioProject Name Actinosynnema mirum DSM 43827
NCBI BioProject ID 19705
NCBI BioProject Accession
PRJNA19705  
NCBI Locus Tag
Amir  
NCBI BioSample Accession
SAMN00001904  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Tatiparthi B. Reddy on 2015-09-10
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Antibiotic production
Biotechnological
GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Antibiotic-producing bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 1(1):46-53 Complete genome sequence of Actinosynnema mirum type strain (101).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Actinosynnema mirum 101, DSM 43827
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina
Sanger
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp; Illumina Regular LMP, 8kb, CLRS  
Number Of Reads
  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
74  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001922
Organism Name
Actinosynnema mirum 101, DSM 43827  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinosynnema  
Genus Synonyms
  
Species
Actinosynnema mirum  
Subspecies
  
Species Synonyms
  
Strain
101, DSM 43827  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 43827  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6776  
Exemplar Name
Actinosynnema mirum  
Taxon DOI
10.1601/tx.6776  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 446462
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Actinosynnema  
NCBI Species
Actinosynnema mirum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 267378
Genbank 16S ID AF328679
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
10-30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Plants
Metabolisms Nocardicin A producer
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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