PROJECT NAME
GOLD Project ID
Gp0001921  
Project Name
Variovorax paradoxus EPS  
Other Names
  
Legacy ER Project ID
11820  
Legacy GOLD ID
Gi02063, Gc01580  
NCBI BioProject Name Variovorax paradoxus EPS
NCBI BioProject ID 43457
NCBI BioProject Accession
PRJNA43457  
NCBI Locus Tag
Varpa  
NCBI BioSample Accession
SAMN00149467  
PI Han, Jong-In
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Variovorax paradoxus EPS genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Information
Database
  
Genome Publications Genome announcements Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies CSP_788249, Variovorax Paradoxus Strains
Analysis Projects Variovorax paradoxus EPS
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001921
Organism Name
Variovorax paradoxus EPS  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Variovorax  
Genus Synonyms
  
Species
Variovorax paradoxus  
Subspecies
  
Species Synonyms
  
Strain
EPS  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 595537
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Variovorax  
NCBI Species
Variovorax paradoxus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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