PROJECT INFORMATION
GOLD Project ID
Gp0001917  
Project Name
Azospira oryzae PS  
Other Names
  
Legacy ER Project ID
11816  
Legacy GOLD ID
Gi02059, Gc02305  
NCBI BioProject Name Azospira oryzae PS
NCBI BioProject ID 37693
NCBI BioProject Accession PRJNA37693
NCBI Locus Tag
DSUI  
NCBI BioSample Accession SAMN02232011
PI John Coates
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2018-06-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, Berkeley (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Dechlorosoma suillum PS genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(10):2767-8 Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS.
Other Publications
  
PROJECT COMPOSITION
Study Biogeochemically important bacteria
Organism Azospira oryzae PS
Analysis Projects Azospira oryzae PS
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001917
Organism Name
Azospira oryzae PS  
Other names (alias, synonyms, short names, common names)
Azospira suillum PS  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Azospira  
Genus Synonyms
Dechlorosoma  
Species
Azospira oryzae  
Subspecies
  
Species Synonyms
  
Strain
PS  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 13638  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2033  
Exemplar Name
Azospira oryzae  
Taxon DOI
10.1601/tx.2033  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 640081
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Rhodocyclales  
NCBI Family
Rhodocyclaceae  
NCBI Genus
Azospira  
NCBI Species
Azospira oryzae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF011347
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sediment
Aquatic
Soil
Host
Metabolisms
  
Phenotypes
  
Energy Sources Diazotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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