PROJECT NAME
GOLD Project ID
Gp0001913  
Project Name
Hyphomicrobium denitrificans ATCC 51888  
Other Names
  
Legacy ER Project ID
11812  
Legacy GOLD ID
Gi02055, Gc01346  
NCBI BioProject Name Hyphomicrobium denitrificans ATCC 51888
NCBI BioProject ID 33261
NCBI BioProject Accession
PRJNA33261  
NCBI Locus Tag
Hden  
NCBI BioSample Accession
SAMN02598499  
PI Yves Brun
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Budding bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Information
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies CSP_787681, Stalked bacteria
Analysis Projects Hyphomicrobium denitrificans ATCC 51888
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001913
Organism Name
Hyphomicrobium denitrificans ATCC 51888  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Hyphomicrobium  
Genus Synonyms
  
Species
Hyphomicrobium denitrificans  
Subspecies
  
Species Synonyms
  
Strain
ATCC 51888  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 51888  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1517  
Exemplar Name
Hyphomicrobium denitrificans  
Taxon DOI
10.1601/tx.1517  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 582899
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Hyphomicrobiaceae  
NCBI Genus
Hyphomicrobium  
NCBI Species
Hyphomicrobium denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Y14308
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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