PROJECT NAME
GOLD Project ID
Gp0001862  
Project Name
Salmonella enterica sv. Paratyphi A AKU_12601  
Other Names
  
Legacy ER Project ID
11757  
Legacy GOLD ID
Gi00541, Gc00853  
NCBI BioProject Name Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NCBI BioProject ID 30943
NCBI BioProject Accession
PRJEA30943  
NCBI Locus Tag
SSPA  
NCBI BioSample Accession
SAMEA1705953  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute Imperial College London
Funding Agency Wellcome Trust Sanger Institute (United Kingdom)
Project Description
Clinical isolate  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications BMC genomics 10(36):36 Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Salmonella enterica sv Paratyphi A AKU_12601
Analysis Projects Salmonella enterica sv. Paratyphi A AKU_12601
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
2-2.8Kb, 5-6Kb, 6-9Kb, and 20-30Kb inserts  
Number Of Reads
83857 from small insert libraries, 1180 from BAC library, 3191127 from Illumina  
Read Size
  
Vector
pUC19, pMAQ1b and pBACe3.6  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001862
Organism Name
Salmonella enterica sv. Paratyphi A AKU_12601  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Salmonella  
Genus Synonyms
  
Species
Salmonella enterica  
Subspecies
  
Species Synonyms
  
Strain
AKU_12601  
Strain Synonyms
  
Serovar-Biovar
Paratyphi A  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 554290
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Salmonella  
NCBI Species
Salmonella enterica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases Food poisoning
Gastroenteritis
Salmonellosis
Typhoid fever
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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