PROJECT NAME
GOLD Project ID
Gp0001833  
Project Name
Roseobacter denitrificans Shiba O Ch 114  
Other Names
  
Legacy ER Project ID
11734  
Legacy GOLD ID
Gi00514  
NCBI BioProject Name
  
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI IG
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Biotechnological
Environmental
Sequencing Center Integrated Genomics (USA)
Collaborating Institute
  
Funding Agency Integrated Genomics (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Roseobacter denitrificans Shiba O Ch 114
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000272
Organism Name
Roseobacter denitrificans Shiba O Ch 114  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseobacter  
Genus Synonyms
  
Species
Roseobacter denitrificans  
Subspecies
  
Species Synonyms
  
Strain
Shiba O Ch 114  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33942  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1137  
Exemplar Name
Roseobacter denitrificans  
Taxon DOI
10.1601/tx.1137  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 375451
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Roseobacter  
NCBI Species
Roseobacter denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 109965
Genbank 16S ID M96746
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Host
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Photosynthetic
Phototroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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