PROJECT INFORMATION
GOLD Project ID
Gp0001809  
Project Name
Rhizobium leguminosarum bv. trifolii WSM1325  
Other Names
  
Legacy ER Project ID
11710  
Legacy GOLD ID
Gi01547, Gc01039  
NCBI BioProject Name Rhizobium leguminosarum bv. trifolii WSM1325
NCBI BioProject ID 20097
NCBI BioProject Accession PRJNA20097
NCBI Locus Tag
Rleg  
NCBI BioSample Accession SAMN00000703
PI Wayne G. Reeve
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Root Nodulating Bacteria (RNB)
Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Symbiotic nitrogen-fixing bacteria of Mediterranean perennial clover plants  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Information
Database
  
Genome Publications Standards in genomic sciences 2(3):347-56 Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.
Other Publications
  
PROJECT COMPOSITION
Study CSP_776821
Analysis Projects Rhizobium leguminosarum bv. trifolii WSM1325
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Sanger
Library Method (MIGS-28)
2Kb, 8Kb, Fosmid, 454  
Number Of Reads
  
Read Size
  
Vector
pTH1522, pMCL200, pcc1Fos  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
5  
ORGANISM NAME
GOLD Organism ID Go0001809
Organism Name
Rhizobium leguminosarum bv. trifolii WSM1325  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhizobium  
Genus Synonyms
  
Species
Rhizobium leguminosarum  
Subspecies
  
Species Synonyms
  
Strain
WSM1325  
Strain Synonyms
  
Serovar-Biovar
bv. trifolii  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 395491
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Rhizobium  
NCBI Species
Rhizobium leguminosarum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Beach  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Annual clovers  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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