PROJECT NAME
GOLD Project ID
Gp0001808  
Project Name
Renibacterium salmoninarum ATCC 33209  
Other Names
  
Legacy ER Project ID
11709  
Legacy GOLD ID
Gi00502, Gc00698  
NCBI BioProject Name Renibacterium salmoninarum ATCC 33209
NCBI BioProject ID 19227
NCBI BioProject Accession
PRJNA19227  
NCBI Locus Tag
RSal33209  
NCBI BioSample Accession
SAMN02603684  
PI
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Fish Pathogen
Medical
Sequencing Center Integrated Genomics (USA)
Collaborating Institute University of Washington (USA)
U.S. Department of Agriculture, Agricultural Research Service (USA)
Funding Agency U.S. Department of Agriculture (France)
Project Description
Causative agent of salmonid bacterial kidney disease  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 190(21):6970-82 Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Renibacterium salmoninarum ATCC 33209
Analysis Projects Renibacterium salmoninarum ATCC 33209
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2.5Kb, partial fosmid library  
Number Of Reads
52183  
Read Size
  
Vector
pUC19, pCCFOS, pCR-Blunt II-TOPO  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001808
Organism Name
Renibacterium salmoninarum ATCC 33209  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Renibacterium  
Genus Synonyms
  
Species
Renibacterium salmoninarum  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33209  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33209  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5898  
Exemplar Name
Renibacterium salmoninarum  
Taxon DOI
10.1601/tx.5898  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 288705
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Micrococcaceae  
NCBI Genus
Renibacterium  
NCBI Species
Renibacterium salmoninarum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 20744
Genbank 16S ID X51601
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
15  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Bacterial kidney disease
Known Habitats Fresh water
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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