PROJECT NAME
GOLD Project ID
Gp0001787  
Project Name
Propionibacterium freudenreichii shermanii CIRM-BIA1  
Other Names
  
Legacy ER Project ID
11686  
Legacy GOLD ID
Gi00772, Gc01356  
NCBI BioProject Name Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
NCBI BioProject ID 46291
NCBI BioProject Accession
PRJEA46291  
NCBI Locus Tag
PFREUD  
NCBI BioSample Accession
  
PI Helene Falentin
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Food industry
Lactic acid production
Sequencing Center CEA Genoscope (France)
Collaborating Institute National Institute for Agricultural Research (INRA) (France)
Funding Agency
  
Project Description
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Report
Database
  
Genome Publications PloS one 5(7):e11748 The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Propionibacterium freudenreichii shermanii CIRM-BIA1
Analysis Projects Propionibacterium freudenreichii shermanii CIRM-BIA1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 kb , 10 kb and 25 kb inserts  
Number Of Reads
43776  
Read Size
  
Vector
pSU18, pBeloBac11  
GC Percent
67  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001787
Organism Name
Propionibacterium freudenreichii shermanii CIRM-BIA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Propionibacterium  
Genus Synonyms
  
Species
Propionibacterium freudenreichii  
Subspecies
shermanii  
Species Synonyms
  
Strain
CIRM-BIA1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 9614  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6612  
Exemplar Name
Propionibacterium freudenreichii shermanii  
Taxon DOI
10.1601/tx.6612  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 380773
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Y10819:{1-1510}
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?