PROJECT NAME
GOLD Project ID
Gp0001778  
Project Name
Photorhabdus asymbiotica asymbiotica ATCC 43949  
Other Names
  
Legacy ER Project ID
11676  
Legacy GOLD ID
Gi00448, Gc01059  
NCBI BioProject Name Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949
NCBI BioProject ID 30577
NCBI BioProject Accession
PRJEA30577  
NCBI Locus Tag
PAU  
NCBI BioSample Accession
SAMEA2272210  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute University of Bath
Funding Agency Institute of Food Research (United Kingdom)
Project Description
Bioluminescent clinical strain  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Taxonomy
Entrez
Pathogenicity
Database
  
Genome Publications BMC genomics 10(302):302 Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Photorhabdus asymbiotica asymbiotica ATCC 43949
Analysis Projects Photorhabdus asymbiotica asymbiotica ATCC 43949
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
5.5-6Kb, 2.8-5.5Kb, 10-25Kb  
Number Of Reads
  
Read Size
  
Vector
pMAQ1b, pUC19, pUC18, pBACe3.6_BamHI  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0008284
Organism Name
Photorhabdus asymbiotica asymbiotica ATCC 43949  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photorhabdus  
Genus Synonyms
  
Species
Photorhabdus asymbiotica  
Subspecies
asymbiotica  
Species Synonyms
  
Strain
ATCC 43949  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43949  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553480
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Photorhabdus  
NCBI Species
Photorhabdus asymbiotica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 113360
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Nematode  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Soft tissue infection
Systemic infection
Known Habitats Blood
Host
Insect gut
Nematode symbiont
Soft tissue
Metabolisms
  
Phenotypes Bioluminescent
Pathogen
Energy Sources
  

 

 

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