Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0001774
|
|
Project Name
|
Persephonella marina EX-H1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11671
|
|
Legacy GOLD ID
|
Gi00443, Gc00938
|
| NCBI BioProject Name | Persephonella marina EX-H1 |
|
NCBI BioProject Accession
|
PRJNA12526 |
|
NCBI Locus Tag
|
PERMA
|
|
NCBI BioSample Accession
|
SAMN02604029 |
|
Source Sample ID
|
|
| PI | anna-louise reysenbach |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | JGI automated process on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological |
|
Sequencing Center
|
J. Craig Venter Institute
(USA)
|
|
Collaborating Institute
|
Portland State University
(USA)
|
|
Funding Agency
|
National Science Foundation (NSF)
(USA)
|
|
Project Description
|
A thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Journal of bacteriology: 191(6):1992-3 Complete and draft genome sequences of six members of the Aquificales. PubMed: 19136599 DOI: 10.1128/JB.01645-08 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Persephonella marina EX-H1 |
| Organism |
Persephonella marina EX-H1 |
| Analysis Projects |
Persephonella marina EX-H1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
2-3kb, 10-12kb, 39-40kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
pHOS, pBR322, pCC1FOS
|
| GC Percent |
37
|
| Chromosome Count |
1
|
| Plasmid Count |
1
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001774 |
| Organism Name |
Persephonella marina EX-H1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
AQUIFICOTA
|
| Genus |
Persephonella
|
| Genus Synonyms |
|
| Species |
Persephonella marina
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
EX-H1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 14350
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.438
|
| Exemplar Name |
Persephonella marina
|
| Taxon DOI |
10.1601/tx.438
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
123214 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Aquificota
|
| NCBI Class |
Aquificae
|
| NCBI Order |
Aquificales
|
| NCBI Family |
Hydrogenothermaceae
|
| NCBI Genus |
Persephonella
|
| NCBI Species |
Persephonella marina
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Hydrothermal vents
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
303416 |
| Genbank 16S ID |
AF188332 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Microaerophilic
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Thermophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Marine Aquatic Hot spring Hydrothermal vent |
| Metabolisms |
Nitrate reducer Hydrogen oxidizer |
| Phenotypes |
|
| Energy Sources |
Chemolithoautotroph |
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