PROJECT INFORMATION | |
---|---|
GOLD Project ID
![]() |
Gp0001774
|
Project Name
![]() |
Persephonella marina EX-H1
|
Other Names
![]() |
|
Legacy ER Project ID
![]() |
11671
|
Legacy GOLD ID
![]() |
Gi00443, Gc00938
|
NCBI BioProject Name | Persephonella marina EX-H1 |
NCBI BioProject Accession
![]() |
PRJNA12526 |
NCBI Locus Tag
![]() |
PERMA
|
NCBI BioSample Accession
![]() |
SAMN02604029 |
Source Sample ID
![]() |
|
PI | anna-louise reysenbach |
Added By | Nikos Kyrpides on 2007-11-27 |
Last Modified By | JGI automated process on 2014-03-26 |
Project Comments |
|
Project Status
![]() |
Complete and Published
|
Project Relevance
![]() |
Biotechnological |
Sequencing Center
![]() |
J. Craig Venter Institute
(USA)
|
Collaborating Institute
![]() |
Portland State University
(USA)
|
Funding Agency
![]() |
National Science Foundation (NSF)
(USA)
|
Project Description
![]() |
A thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents.
|
Is JGI Project |
No
|
Project Information Visibility
![]() |
Public |
PROJECT TYPE | |
Specimen
![]() |
Organism |
Nucleic Acid
![]() |
DNA |
Sequencing Strategy
![]() |
Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
![]() |
|
JGI Award DOI
![]() |
|
Genome Publications
![]() |
Journal of bacteriology: 191(6):1992-3 Complete and draft genome sequences of six members of the Aquificales. PubMed: 19136599 DOI: 10.1128/JB.01645-08 |
Other Publications
![]() |
|
Ignored Publications
![]() |
|
Unassigned Publications
![]() |
|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
Persephonella marina EX-H1 |
Organism |
Persephonella marina EX-H1 |
Analysis Projects |
Persephonella marina EX-H1 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
![]() |
Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
![]() |
|
Contamination Screening Input
![]() |
|
DNA Amplification Method
![]() |
|
Single Cell Lysis Protocol
![]() |
|
Single Cell Lysis Approach
![]() |
|
Sequencing Comments
![]() |
|
DNA Amplification Kit
![]() |
|
Sequencing Technology
(MIGS-29)
![]() |
Sanger |
Library Method
(MIGS-28)
![]() |
2-3kb, 10-12kb, 39-40kb
|
Library Layout
![]() |
|
Library Screening Method
![]() |
|
Number Of Reads
![]() |
|
Read Size
![]() |
|
Vector
![]() |
pHOS, pBR322, pCC1FOS
|
GC Percent |
37
|
Chromosome Count |
1
|
Plasmid Count |
1
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0001774 |
Organism Name |
Persephonella marina EX-H1
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
AQUIFICOTA
|
Genus |
Persephonella
|
Genus Synonyms |
|
Species |
Persephonella marina
|
Subspecies |
|
Species Synonyms |
|
Strain |
EX-H1
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 14350
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.438
|
Exemplar Name |
Persephonella marina
|
Taxon DOI |
10.1601/tx.438
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
![]() |
|
NCBI Taxonomy ID |
123214 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Aquificota
|
NCBI Class |
Aquificae
|
NCBI Order |
Aquificales
|
NCBI Family |
Hydrogenothermaceae
|
NCBI Genus |
Persephonella
|
NCBI Species |
Persephonella marina
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Marine
|
Ecosystem Subtype |
Hydrothermal vents
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
303416 |
Genbank 16S ID |
AF188332 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Microaerophilic
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Thermophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Marine Aquatic Hot spring Hydrothermal vent |
Metabolisms |
Nitrate reducer Hydrogen oxidizer |
Phenotypes |
|
Energy Sources |
Chemolithoautotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?