PROJECT NAME
GOLD Project ID
Gp0001774  
Project Name
Persephonella marina EX-H1  
Other Names
  
Legacy ER Project ID
11671  
Legacy GOLD ID
Gi00443, Gc00938  
NCBI BioProject Name Persephonella marina EX-H1
NCBI BioProject ID 12526
NCBI BioProject Accession
PRJNA12526  
NCBI Locus Tag
PERMA  
NCBI BioSample Accession
SAMN02604029  
PI anna-louise reysenbach
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute Portland State University
Funding Agency National Science Foundation (NSF) (USA)
Project Description
A thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Thermophilic
Aquificales Data Warehouse
Isolation
Entrez
Database
  
Genome Publications Journal of bacteriology 191(6):1992-3 Complete and draft genome sequences of six members of the Aquificales.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Persephonella marina EX-H1
Analysis Projects Persephonella marina EX-H1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3kb, 10-12kb, 39-40kb  
Number Of Reads
  
Read Size
  
Vector
pHOS, pBR322, pCC1FOS   
GC Percent
37  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001774
Organism Name
Persephonella marina EX-H1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Persephonella  
Genus Synonyms
  
Species
Persephonella marina  
Subspecies
  
Species Synonyms
  
Strain
EX-H1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14350  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.438  
Exemplar Name
Persephonella marina  
Taxon DOI
10.1601/tx.438  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 123214
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Hydrogenothermaceae  
NCBI Genus
Persephonella  
NCBI Species
Persephonella marina  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 303416
Genbank 16S ID AF188332
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
73  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Hydrothermal vent
Marine
Metabolisms Hydrogen oxidizer
Nitrate reducer
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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