JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0001766
Project Name	Parvularcula bermudensis HTCC2503
Other Names
Legacy ER Project ID	11664
Legacy GOLD ID	Gi00868, Gc01429
NCBI BioProject Name	Parvularcula bermudensis HTCC2503
NCBI BioProject ID	13509
NCBI BioProject Accession	PRJNA13509
NCBI Locus Tag	PB
NCBI BioSample Accession
PI	Jang-Cheon Cho
Added By	Nikos Kyrpides on 2007-11-27
Last Modified By	Jon Bertsch on 2014-04-08
Project Comments
Project Status	Complete and Published
Project Relevance	Marine Microbial Initiative (MMI) Environmental
Sequencing Center	J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute	Oregon State University (USA)
Funding Agency	Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description	Novel strain resulting from culture method
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
Project Information
Database
Genome Publications	Journal of bacteriology 193(1):305-6 Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
Other Publications
SRA Experiment
PROJECT COMPOSITION
Study	Parvularcula bermudensis HTCC2503
Organism	Parvularcula bermudensis HTCC2503
Analysis Projects	Parvularcula bermudensis HTCC2503
Number of Analysis Projects (AP)	1
Number of Derived Analyis Projects (DAP)	0

ORGANISM NAME
GOLD Organism ID	Go0001766
Organism Name	Parvularcula bermudensis HTCC2503
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	PROTEOBACTERIA-ALPHA
Genus	Parvularcula
Genus Synonyms
Species	Parvularcula bermudensis
Subspecies
Species Synonyms
Strain	HTCC 2503
Strain Synonyms
Serovar/Cultivar
Culture Collection ID	HTCC 2503
Type Strain	Yes
Exemplar DOI	10.1601/ex.1615
Exemplar Name	Parvularcula bermudensis
Taxon DOI	10.1601/tx.1615
Biosafety Level
Organism Comments
Cultured	Yes
Culture Type	Isolate
Organism Type	Natural
Uncultured Type
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	314260
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Proteobacteria
NCBI Class	Alphaproteobacteria
NCBI Order	Parvularculales
NCBI Family	Parvularculaceae
NCBI Genus	Parvularcula
NCBI Species	Parvularcula bermudensis
ISOLATION CLASSIFICATION
Ecosystem	Environmental
Ecosystem Category	Aquatic
Ecosystem Type	Marine
Ecosystem Subtype	Unclassified
Specific Ecosystem	Unclassified
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID	AF544015

GENERAL PROPERTIES
Oxygen Requirement	Aerobe
Cell Shape	Rod-shaped
Motility	Motile
Sporulation	Nonsporulating
Temperature Range	Mesophile
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining	Gram-
Biotic Relationships	Free living
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases	None
Known Habitats	Marine Aquatic
Metabolisms
Phenotypes
Energy Sources	Chemoheterotroph

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