PROJECT INFORMATION
GOLD Project ID
Gp0001766  
Project Name
Parvularcula bermudensis HTCC2503  
Other Names
  
Legacy ER Project ID
11664  
Legacy GOLD ID
Gi00868, Gc01429  
NCBI BioProject Name Parvularcula bermudensis HTCC2503
NCBI BioProject ID 13509
NCBI BioProject Accession PRJNA13509
NCBI Locus Tag
PB  
NCBI BioSample Accession
PI Jang-Cheon Cho
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute Oregon State University (USA)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Novel strain resulting from culture method  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(1):305-6 Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Parvularcula bermudensis HTCC2503
Organism Parvularcula bermudensis HTCC2503
Analysis Projects Parvularcula bermudensis HTCC2503
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001766
Organism Name
Parvularcula bermudensis HTCC2503  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Parvularcula  
Genus Synonyms
  
Species
Parvularcula bermudensis  
Subspecies
  
Species Synonyms
  
Strain
HTCC 2503  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
HTCC 2503  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1615  
Exemplar Name
Parvularcula bermudensis  
Taxon DOI
10.1601/tx.1615  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 314260
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Parvularculales  
NCBI Family
Parvularculaceae  
NCBI Genus
Parvularcula  
NCBI Species
Parvularcula bermudensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF544015
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

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