PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0001766
|
Project Name
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Parvularcula bermudensis HTCC2503
|
Other Names
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|
Legacy ER Project ID
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11664
|
Legacy GOLD ID
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Gi00868, Gc01429
|
NCBI BioProject Name | Parvularcula bermudensis HTCC2503 |
NCBI BioProject Accession
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PRJNA13509 |
NCBI Locus Tag
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PB
|
NCBI BioSample Accession
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|
PI | Jang-Cheon Cho |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Marine Microbial Initiative (MMI) Environmental |
Sequencing Center
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J. Craig Venter Institute
|
Collaborating Institute
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Oregon State University
(USA)
|
Funding Agency
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Gordon and Betty Moore Foundation Marine Microbiology Initiative
(USA)
|
Project Description
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Novel strain resulting from culture method
|
Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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|
JGI Award DOI
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|
Genome Publications
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Journal of bacteriology
193(1):305-6
Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
|
Other Publications
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|
Ignored Publications
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|
Unassigned Publications
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International Journal of Systematic and Evolutionary Microbiology
53(Pt 4):1031-6
Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.
|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
Parvularcula bermudensis HTCC2503 |
Organism |
Parvularcula bermudensis HTCC2503 |
Analysis Projects |
Parvularcula bermudensis HTCC2503 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Contamination Screening Input
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|
DNA Amplification Method
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|
Single Cell Lysis Protocol
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|
Single Cell Lysis Approach
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|
Sequencing Comments
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DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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|
Library Layout
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|
Library Screening Method
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
61
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0001766 |
Organism Name |
Parvularcula bermudensis HTCC2503
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
Parvularcula
|
Genus Synonyms |
|
Species |
Parvularcula bermudensis
|
Subspecies |
|
Species Synonyms |
|
Strain |
HTCC 2503
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
HTCC 2503
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.1615
|
Exemplar Name |
Parvularcula bermudensis
|
Taxon DOI |
10.1601/tx.1615
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
314260 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Parvularculales
|
NCBI Family |
Parvularculaceae
|
NCBI Genus |
Parvularcula
|
NCBI Species |
Parvularcula bermudensis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Marine
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
AF544015 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Marine Aquatic |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Chemoheterotroph |
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