Studies
|
53,970 |
|
Biosamples
|
170,233 |
|
Sequencing Projects
|
480,729 |
|
Analysis Projects
|
360,434 |
| Organisms | 467,880 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0001766
|
|
Project Name
|
Parvularcula bermudensis HTCC2503
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11664
|
|
Legacy GOLD ID
|
Gi00868, Gc01429
|
| NCBI BioProject Name | Parvularcula bermudensis HTCC2503 |
|
NCBI BioProject Accession
|
PRJNA13509 |
|
NCBI Locus Tag
|
PB
|
|
NCBI BioSample Accession
|
|
| PI | Jang-Cheon Cho |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Marine Microbial Initiative (MMI) Environmental |
|
Sequencing Center
|
J. Craig Venter Institute
|
|
Collaborating Institute
|
Oregon State University
(USA)
|
|
Funding Agency
|
Gordon and Betty Moore Foundation Marine Microbiology Initiative
(USA)
|
|
Project Description
|
Novel strain resulting from culture method
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Journal of bacteriology
193(1):305-6
Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
International Journal of Systematic and Evolutionary Microbiology
53(Pt 4):1031-6
Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Parvularcula bermudensis HTCC2503 |
| Organism |
Parvularcula bermudensis HTCC2503 |
| Analysis Projects |
Parvularcula bermudensis HTCC2503 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
61
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001766 |
| Organism Name |
Parvularcula bermudensis HTCC2503
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Parvularcula
|
| Genus Synonyms |
|
| Species |
Parvularcula bermudensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
HTCC 2503
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
HTCC 2503
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.1615
|
| Exemplar Name |
Parvularcula bermudensis
|
| Taxon DOI |
10.1601/tx.1615
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
314260 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Parvularculales
|
| NCBI Family |
Parvularculaceae
|
| NCBI Genus |
Parvularcula
|
| NCBI Species |
Parvularcula bermudensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AF544015 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Marine Aquatic |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Chemoheterotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
