PROJECT NAME
GOLD Project ID
Gp0001761  
Project Name
Opitutus terrae PB90-1  
Other Names
  
Legacy ER Project ID
11658  
Legacy GOLD ID
Gi01027, Gc00764  
NCBI BioProject Name Opitutus terrae PB90-1
NCBI BioProject ID 19989
NCBI BioProject Accession
PRJNA19989  
NCBI Locus Tag
Oter  
NCBI BioSample Accession
SAMN00000285  
PI Thomas Schmidt
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Rice paddy soil bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Journal of bacteriology 193(9):2367-8 Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Verrucomicrobia, 5 species Proposal # 0087-060710
Analysis Projects Opitutus terrae PB90-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS20
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001761
Organism Name
Opitutus terrae PB90-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
VERRUCOMICROBIA  
Genus
Opitutus  
Genus Synonyms
  
Species
Opitutus terrae  
Subspecies
  
Species Synonyms
  
Strain
PB90-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 11246  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8410  
Exemplar Name
Opitutus terrae PB90-1  
Taxon DOI
10.1601/tx.8410  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 452637
NCBI Kingdom
  
NCBI Phylum
Verrucomicrobia  
NCBI Class
Opitutae  
NCBI Order
Opitutales  
NCBI Family
Opitutaceae  
NCBI Genus
Opitutus  
NCBI Species
Opitutus terrae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural land  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 162550
Genbank 16S ID AJ229235
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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