PROJECT NAME
GOLD Project ID
Gp0001676  
Project Name
Nautilia profundicola Am-H  
Other Names
  
Legacy ER Project ID
11571  
Legacy GOLD ID
Gi00397, Gc00958  
NCBI BioProject Name Nautilia profundicola AmH
NCBI BioProject ID 32573
NCBI BioProject Accession
PRJNA32573  
NCBI Locus Tag
GAMH  
NCBI BioSample Accession
SAMN02603431  
PI Barbara J Campbell
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Carbon cycle
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of Delaware
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Chemoautotroph isolated from a hydrothermal vent worm.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications PLoS genetics 5(2):e1000362 Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Nautilia profundicola Am-H
Analysis Projects Nautilia profundicola Am-H
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3 kb, 8-10 kb, 10-12 kb  
Number Of Reads
  
Read Size
  
Vector
pHOS2  
GC Percent
34  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001676
Organism Name
Nautilia profundicola Am-H  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Nautilia  
Genus Synonyms
  
Species
Nautilia profundicola  
Subspecies
  
Species Synonyms
  
Strain
Am-H  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1463  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13466  
Exemplar Name
Nautilia profundicola  
Taxon DOI
10.1601/tx.13466  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 598659
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Nautiliales  
NCBI Family
Nautiliaceae  
NCBI Genus
Nautilia  
NCBI Species
Nautilia profundicola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF357197
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
40 - 45  
Salinity
  
pH
6.0 - 9.0  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Host
Hydrothermal vent
Metabolisms Hydrogen oxidizer
Sulfur reducer
Phenotypes
  
Energy Sources Chemoautotroph

 

 

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