| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0001593
|
|
Project Name
|
Methylobacterium extorquens DM4
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11489
|
|
Legacy GOLD ID
|
Gi01019, Gc01065
|
| NCBI BioProject Name | Methylobacterium extorquens DM4 |
|
NCBI BioProject ID
|
16093 |
|
NCBI BioProject Accession
|
PRJNA16093 |
|
NCBI Locus Tag
|
METDI
|
|
NCBI BioSample Accession
|
SAMEA3138288 |
| PI | Stéphane Vuilleumier |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological Methanol production |
|
Sequencing Center
|
CEA Genoscope
(France)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Dicholoromethane degrading bacterium
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Isolation |
|
Database
|
|
|
Genome Publications
|
PloS one
4(5):e5584
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Methylobacterium extorquens DM4 |
| Analysis Projects |
Methylobacterium extorquens DM4 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
3Kb, 10Kb, 25Kb
|
|
Number Of Reads
|
122074
|
|
Read Size
|
|
|
Vector
|
pUC19, pNAV, pCNS, pBeloBAC11
|
| GC Percent |
68
|
| Chromosome Count |
1
|
| Plasmid Count |
2
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001593 |
| Organism Name |
Methylobacterium extorquens DM4
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Methylobacterium
|
| Genus Synonyms |
|
| Species |
Methylobacterium extorquens
|
| Subspecies |
|
| Species Synonyms |
dichloromethanicum
|
| Strain |
DM4
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 6343
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.1585
|
| Exemplar Name |
Methylobacterium dichloromethanicum
|
| Taxon DOI |
10.1601/tx.1585
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
661410 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhizobiales
|
| NCBI Family |
Methylobacteriaceae
|
| NCBI Genus |
Methylorubrum
|
| NCBI Species |
Methylorubrum extorquens
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Contaminated
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
159963 |
| Genbank 16S ID |
AF227128 |
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs |
| Diseases |
None |
| Known Habitats |
Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Methylotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
