PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0001593
|
Project Name
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Methylorubrum extorquens DM4
|
Other Names
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|
Legacy ER Project ID
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11489
|
Legacy GOLD ID
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Gi01019, Gc01065
|
NCBI BioProject Name | Methylobacterium extorquens DM4 |
NCBI BioProject ID
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16093 |
NCBI BioProject Accession
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PRJNA16093 |
NCBI Locus Tag
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METDI
|
NCBI BioSample Accession
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SAMEA3138288 |
PI | Stéphane Vuilleumier |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Supratim Mukherjee
on 2018-09-24 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Biotechnological Methanol production |
Sequencing Center
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CEA Genoscope
(France)
|
Collaborating Institute
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|
Funding Agency
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|
Project Description
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Dicholoromethane degrading bacterium
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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Isolation |
Database
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|
Genome Publications
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PloS one
4(5):e5584
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Methylobacterium extorquens DM4 |
Organism |
Methylorubrum extorquens DM4 |
Analysis Projects |
Methylorubrum extorquens DM4 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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|
Library Method
(MIGS-28)
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3Kb, 10Kb, 25Kb
|
Number Of Reads
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122074
|
Read Size
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|
Vector
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pUC19, pNAV, pCNS, pBeloBAC11
|
GC Percent |
68
|
Chromosome Count |
1
|
Plasmid Count |
2
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0001593 |
Organism Name |
Methylorubrum extorquens DM4
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
Methylorubrum
|
Genus Synonyms |
|
Species |
Methylorubrum extorquens
|
Subspecies |
|
Species Synonyms |
dichloromethanicum
|
Strain |
DM4
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 6343
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.1585
|
Exemplar Name |
Methylobacterium dichloromethanicum
|
Taxon DOI |
10.1601/tx.1585
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
661410 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Rhizobiales
|
NCBI Family |
Methylobacteriaceae
|
NCBI Genus |
Methylorubrum
|
NCBI Species |
Methylorubrum extorquens
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Terrestrial
|
Ecosystem Type |
Soil
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Contaminated
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
159963 |
Genbank 16S ID |
AF227128 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles Pairs |
Diseases |
None |
Known Habitats |
Soil |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
Methylotroph |
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