PROJECT NAME
GOLD Project ID
Gp0001593  
Project Name
Methylobacterium extorquens DM4  
Other Names
  
Legacy ER Project ID
11489  
Legacy GOLD ID
Gi01019, Gc01065  
NCBI BioProject Name Methylobacterium extorquens DM4
NCBI BioProject ID 16093
NCBI BioProject Accession
PRJNA16093  
NCBI Locus Tag
METDI  
NCBI BioSample Accession
SAMEA3138288  
PI Stéphane Vuilleumier
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Methanol production
Sequencing Center CEA Genoscope (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Dicholoromethane degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications PloS one 4(5):e5584 Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Methylobacterium extorquens DM4
Analysis Projects Methylobacterium extorquens DM4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3Kb, 10Kb, 25Kb  
Number Of Reads
122074  
Read Size
  
Vector
pUC19, pNAV, pCNS, pBeloBAC11  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0001593
Organism Name
Methylobacterium extorquens DM4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylobacterium  
Genus Synonyms
  
Species
Methylobacterium extorquens  
Subspecies
  
Species Synonyms
dichloromethanicum  
Strain
DM4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 6343  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1585  
Exemplar Name
Methylobacterium dichloromethanicum  
Taxon DOI
10.1601/tx.1585  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 661410
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Methylobacteriaceae  
NCBI Genus
Methylobacterium  
NCBI Species
Methylobacterium extorquens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 159963
Genbank 16S ID AF227128
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources Methylotroph

 

 

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