PROJECT NAME
GOLD Project ID
Gp0001523  
Project Name
Heliobacterium modesticaldum Ice1  
Other Names
  
Legacy ER Project ID
11425  
Legacy GOLD ID
Gi00725, Gc00721  
NCBI BioProject Name Heliobacterium modesticaldum Ice1
NCBI BioProject ID 13427
NCBI BioProject Accession
PRJNA13427  
NCBI Locus Tag
HM  
NCBI BioSample Accession
SAMN02602985  
PI Blankenship RE
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center
  
Collaborating Institute TGen (USA)
Arizona State University (USA)
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Phototrophic thermophile  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Isolation
Taxonomy
Database
  
Genome Publications Journal of bacteriology 190(13):4687-96 The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Heliobacterium modesticaldum Ice1
Analysis Projects Heliobacterium modesticaldum Ice1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3-4kb, 28-47kb   
Number Of Reads
51795  
Read Size
  
Vector
pOTWI3, pEpiFOS-5  
GC Percent
57  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001523
Organism Name
Heliobacterium modesticaldum Ice1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Heliobacterium  
Genus Synonyms
  
Species
Heliobacterium modesticaldum  
Subspecies
  
Species Synonyms
  
Strain
Ice1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 51547  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4362  
Exemplar Name
Heliobacterium modesticaldum  
Taxon DOI
10.1601/tx.4362  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 498761
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Heliobacteriaceae  
NCBI Genus
Heliobacterium  
NCBI Species
Heliobacterium modesticaldum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 121638
Genbank 16S ID U14559
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Thermophile  
Temperature Optimum
50 - 52  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Hot spring
Soil
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic
Phototroph

 

 

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