PROJECT NAME
GOLD Project ID
Gp0001510  
Project Name
Flavobacterium columnare ATCC 49512  
Other Names
  
Legacy ER Project ID
11412  
Legacy GOLD ID
Gi01994, Gc02066  
NCBI BioProject Name Flavobacterium columnare ATCC 49512
NCBI BioProject ID 67781
NCBI BioProject Accession
PRJNA67781  
NCBI Locus Tag
FCOL  
NCBI BioSample Accession
  
PI Dyer D
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Fish Pathogen
Sequencing Center University of Oklahoma (USA)
Collaborating Institute Mississippi State University (USA)
Funding Agency
  
Project Description
Purified genomic DNA obtained from ATCC 49512 F. columnare is considered ubiquitous in the warmwater aquatic environment, and it is the causative agent of columnaris disease in fish. Columnaris disease is common throughout the world and infects most species of freshwater fish, including aquaculture species, wild fish populations, and ornamental fish  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Flavobacterium columnare ATCC 49512
Analysis Projects Flavobacterium columnare ATCC 49512
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001510
Organism Name
Flavobacterium columnare ATCC 49512  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Flavobacterium  
Genus Synonyms
  
Species
Flavobacterium columnare  
Subspecies
  
Species Synonyms
  
Strain
ATCC 49512  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 49512  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1041826
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Flavobacterium  
NCBI Species
Flavobacterium columnare  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Columnaris disease
Known Habitats Aquatic
Fresh water
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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