PROJECT NAME
GOLD Project ID
Gp0001487  
Project Name
Geobacter bemidjiensis Bem, DSM 16622  
Other Names
  
Legacy ER Project ID
11390  
Legacy GOLD ID
Gi01650, Gc00849  
NCBI BioProject Name Geobacter bemidjiensis Bem
NCBI BioProject ID 17707
NCBI BioProject Accession
PRJNA17707  
NCBI Locus Tag
Gbem  
NCBI BioSample Accession
SAMN02598400  
PI Lovley, Derek
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metal-reducing microorganism  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications BMC genomics 11(490):490 The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Communities GTL
Analysis Projects Geobacter bemidjiensis Bem, DSM 16622
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001487
Organism Name
Geobacter bemidjiensis Bem, DSM 16622  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geobacter  
Genus Synonyms
  
Species
Geobacter bemidjiensis  
Subspecies
  
Species Synonyms
  
Strain
Bem, DSM 16622  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1014  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9537  
Exemplar Name
Geobacter bemidjiensis  
Taxon DOI
10.1601/tx.9537  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 404380
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geobacter  
NCBI Species
Geobacter bemidjiensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 620864
Genbank 16S ID AY187307
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Sediment
Soil
Metabolisms Iron reducer
Phenotypes
  
Energy Sources Chemolithotroph

 

 

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