PROJECT INFORMATION
GOLD Project ID
Gp0001460  
Project Name
Treponema paraluiscuniculi Cuniculi A  
Other Names
  
Legacy ER Project ID
11363  
Legacy GOLD ID
Gi01874, Gc01816  
NCBI BioProject Name Treponema paraluiscuniculi Cuniculi A
NCBI BioProject ID 30657
NCBI BioProject Accession PRJNA30657
NCBI Locus Tag
TPCCA  
NCBI BioSample Accession SAMN02603006
PI George Weinstock
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Causes syphilis in rabbits  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 6(5):e20415 Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay.
Other Publications
  
PROJECT COMPOSITION
Study Treponema paraluiscuniculi Cuniculi A
Analysis Projects Treponema paraluiscuniculi Cuniculi A
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS20
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001460
Organism Name
Treponema paraluiscuniculi Cuniculi A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Treponema  
Genus Synonyms
  
Species
Treponema paraluiscuniculi  
Subspecies
  
Species Synonyms
  
Strain
Cuniculi A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 545776
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Spirochaetaceae  
NCBI Genus
Treponema  
NCBI Species
Treponema paraluiscuniculi  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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