PROJECT NAME
GOLD Project ID
Gp0001394  
Project Name
Dickeya dadantii 3937  
Other Names
  
Legacy ER Project ID
11299  
Legacy GOLD ID
Gi00235, Gc01377  
NCBI BioProject Name Dickeya dadantii 3937
NCBI BioProject ID 30
NCBI BioProject Accession
PRJNA30  
NCBI Locus Tag
DDA3937  
NCBI BioSample Accession
  
PI Perna N
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Plant Pathogen
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of Wisconsin, Madison (USA)
Funding Agency U.S. Department of Agriculture (France)
Project Description
strain widely used as a model system for research on molecular biology and pathogenicity of this group of bacteria  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Article
Plant_Pathogen
Database
  
Genome Publications Journal of bacteriology 193(8):2076-7 Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Dickeya dadantii 3937
Analysis Projects Dickeya dadantii 3937
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3Kb,10-12Kb  
Number Of Reads
  
Read Size
  
Vector
pHOS2  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001394
Organism Name
Dickeya dadantii 3937  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Dickeya  
Genus Synonyms
Pectobacterium, Erwinia  
Species
Dickeya dadantii  
Subspecies
  
Species Synonyms
chrysanthemi  
Strain
3937  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 198628
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Dickeya  
NCBI Species
Dickeya dadantii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
27 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Soft rot
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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