PROJECT NAME
GOLD Project ID
Gp0001378  
Project Name
Desulfovibrio magneticus RS-1  
Other Names
  
Legacy ER Project ID
11283  
Legacy GOLD ID
Gi00729, Gc01032  
NCBI BioProject Name Desulfovibrio magneticus RS-1
NCBI BioProject ID 32105
NCBI BioProject Accession
PRJDA32105  
NCBI Locus Tag
DMR  
NCBI BioSample Accession
  
PI Fujita N
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
This strain will be used for comparative genome analysis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Database
  
Genome Publications Genome research 19(10):1801-8 Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Desulfovibrio magneticus RS-1
Analysis Projects Desulfovibrio magneticus RS-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1-3kb  
Number Of Reads
250000  
Read Size
  
Vector
pUC118-HincII, SuperCos-1  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0001378
Organism Name
Desulfovibrio magneticus RS-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfovibrio  
Genus Synonyms
  
Species
Desulfovibrio magneticus  
Subspecies
  
Species Synonyms
  
Strain
RS-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700980  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3495  
Exemplar Name
Desulfovibrio magneticus  
Taxon DOI
10.1601/tx.3495  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 573370
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfovibrionales  
NCBI Family
Desulfovibrionaceae  
NCBI Genus
Desulfovibrio  
NCBI Species
Desulfovibrio magneticus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lotic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 267846
Genbank 16S ID D43944
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Aquatic
Fresh water
Mud
Metabolisms Magnetite production
Sulfate reducer
Phenotypes
  
Energy Sources
  

 

 

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