PROJECT INFORMATION
GOLD Project ID
Gp0001376  
Project Name
Candidatus Desulforudis audaxviator MP104C  
Other Names
  
Legacy ER Project ID
11282  
Legacy GOLD ID
Gi01880, Gc00733  
NCBI BioProject Name Candidatus Desulforudis audaxviator MP104C
NCBI BioProject ID 21047
NCBI BioProject Accession PRJNA21047
NCBI Locus Tag
Daud  
NCBI BioSample Accession SAMN02598442
PI Terry Hazen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
National Aeronautics and Space Administration (NASA) (USA)
Project Description
Isolated from a gold mine borehole  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Poster
Gm00027
Entrez
Taxonomy
Database
  
Genome Publications "Science (New York, N.Y.)" 322(5899):275-8 Environmental genomics reveals a single-species ecosystem deep within Earth.
Other Publications
  
PROJECT COMPOSITION
Study Desulforudis audaxviator MP104C
Analysis Projects Candidatus Desulforudis audaxviator MP104C
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
3kb, 8kb  
Number Of Reads
27900 Sanger reads  
Read Size
  
Vector
pUC18, pMCL200  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001376
Organism Name
Candidatus Desulforudis audaxviator MP104C  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
  
Genus Synonyms
  
Species
Candidatus Desulforudis audaxviator MP104C  
Subspecies
  
Species Synonyms
  
Strain
MP104C  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Population enrichment  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 477974
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptococcaceae  
NCBI Genus
Candidatus Desulforudis  
NCBI Species
Candidatus Desulforudis audaxviator  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Mine  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
60  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Deep subsurface
Metabolisms Sulfate reducer
Nitrogen fixation
Phenotypes
  
Energy Sources
  

 

 

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