PROJECT NAME
GOLD Project ID
Gp0001375  
Project Name
Desulfobacterium autotrophicum HRM2, DSM 3382  
Other Names
  
Legacy ER Project ID
11281  
Legacy GOLD ID
Gi00194, Gc00947  
NCBI BioProject Name Desulfobacterium autotrophicum HRM2
NCBI BioProject ID 20931
NCBI BioProject Accession
PRJNA20931  
NCBI Locus Tag
HRM2  
NCBI BioSample Accession
SAMN02603282  
PI Amann R
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center
  
Collaborating Institute University of Gottingen (Germany)
ANRT (France)
Funding Agency Federal Ministry of Education and Research (BMBF) (Germany)
Project Description
Marine sulfate-reducing anaerobe  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Infos
Taxonomy
Database
  
Genome Publications Environmental microbiology 11(5):1038-55 Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
Other Publications
  
PROJECT COMPOSITION
Studies Desulfobacterium autotrophicum HRM2, DSM 3382
Analysis Projects Desulfobacterium autotrophicum HRM2, DSM 3382
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1.5-2.5Kb, 1.5-3.5Kb, 2.5-4.0Kb  
Number Of Reads
110511  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001375
Organism Name
Desulfobacterium autotrophicum HRM2, DSM 3382  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfobacterium  
Genus Synonyms
  
Species
Desulfobacterium autotrophicum  
Subspecies
  
Species Synonyms
  
Strain
HRM2, DSM 3382  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 3382  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3553  
Exemplar Name
Desulfobacterium autotrophicum  
Taxon DOI
10.1601/tx.3553  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 177437
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfobacterales  
NCBI Family
Desulfobacteraceae  
NCBI Genus
Desulfobacterium  
NCBI Species
Desulfobacterium autotrophicum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 113317
Genbank 16S ID AF418177
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
20 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Marine
Sediment
Metabolisms Sulfate reducer
Phenotypes
  
Energy Sources Lithoautotroph

 

 

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